J3_3CMA_006

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

3CMA|1|0|G|1683, 3CMA|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CMA_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0527

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CMA|1|0|U|1412
3CMA|1|0|A|1413
3CMA|1|0|A|1414
3CMA|1|0|G|1415
*
3CMA|1|0|C|1680
3CMA|1|0|G|1681
3CMA|1|0|A|1682
3CMA|1|0|G|1683
3CMA|1|0|A|1684
3CMA|1|0|A|1685
3CMA|1|0|C|1686
*
3CMA|1|0|G|1695
3CMA|1|0|U|1696
3CMA|1|0|G|1697

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e