J3_3CMA_007

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CMA_007 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0449

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

3CMA|1|0|G|2131
3CMA|1|0|C|2132
3CMA|1|0|U|2133
3CMA|1|0|G|2134
*
3CMA|1|0|C|2241
3CMA|1|0|U|2242
3CMA|1|0|C|2243
3CMA|1|0|A|2244
3CMA|1|0|C|2245
*
3CMA|1|0|G|2256
3CMA|1|0|G|2257
3CMA|1|0|A|2258
3CMA|1|0|C|2259
3CMA|1|0|A|2260
3CMA|1|0|C|2261
3CMA|1|0|C|2262

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain M

50S ribosomal protein L15e