J3_3CMA_015

3D structure

PDB id

3CMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GUCGAU*AACAG

Length

13 nucleotides

Bulged bases

3CMA|1|0|C|2850, 3CMA|1|0|A|2852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CMA_015 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.1377

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3CMA|1|0|C|2831
3CMA|1|0|C|2832
*
3CMA|1|0|G|2848
3CMA|1|0|U|2849
3CMA|1|0|C|2850
3CMA|1|0|G|2851
3CMA|1|0|A|2852
3CMA|1|0|U|2853
*
3CMA|1|0|A|2905
3CMA|1|0|A|2906
3CMA|1|0|C|2907
3CMA|1|0|A|2908
3CMA|1|0|G|2909

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e