J3_3CME_015

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CME_015 not in the Motif Atlas

Homologous match to J3_4V9F_017

Geometric discrepancy: 0.0586

The information below is about J3_4V9F_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

3CME|1|0|U|1531
3CME|1|0|G|1532
3CME|1|0|A|1533
3CME|1|0|C|1534
3CME|1|0|G|1535
*
3CME|1|0|C|1650
3CME|1|0|C|1651
*
3CME|1|0|G|1655
3CME|1|0|A|1656
3CME|1|0|A|1657
3CME|1|0|A|1658
3CME|1|0|A|1659
3CME|1|0|G|1660

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37Ae