Motif J3_08594.4 Version J3_08594.4 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-11 | 5-6 | 7-8 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8OI5_017 | 8OI5 | 0.1052 | 0 | 1 | LSU rRNA | A | 1650 | G | 1651 | A | 1652 | C | 1653 | G | 1654 | * | U | 1787 | C | 1788 | * | G | 1792 | A | 1793 | A | 1794 | A | 1795 | A | 1796 | U | 1797 | cWW | tSH | tHH | cWW | cWW |
| 2 | J3_9SUM_017 | 9SUM | 0.0964 | 0 | A | LSU rRNA | A | 1594 | G | 1595 | A | 1596 | C | 1597 | G | 1598 | * | U | 1734 | C | 1735 | * | G | 1739 | A | 1740 | A | 1741 | A | 1742 | A | 1743 | U | 1744 | cWW | tSH | tHH | cWW | cWW |
| 3 | J3_9PN5_017 | 9PN5 | 0.0924 | 0 | A1 | LSU rRNA | A | 1654 | G | 1655 | A | 1656 | C | 1657 | G | 1658 | * | C | 1791 | C | 1792 | * | G | 1796 | A | 1797 | A | 1798 | A | 1799 | A | 1800 | U | 1801 | cWW | tSH | tHH | cWW | cWW |
| 4 | J3_9AXU_018 | 9AXU | 0.0740 | 0 | 2 | LSU rRNA | A | 1689 | G | 1690 | A | 1691 | C | 1692 | G | 1693 | * | C | 1832 | C | 1833 | * | G | 1837 | A | 1838 | A | 1839 | A | 1840 | A | 1841 | U | 1842 | cWW | tSH | tHH | cWW | cWW |
| 5 | J3_8GLP_033 | 8GLP | 0.0766 | 0 | L5 | LSU rRNA | A | 2598 | G | 2599 | A | 2600 | A | 2601 | G | 2602 | * | C | 2737 | C | 2738 | * | G | 2742 | A | 2743 | A | 2744 | A | 2745 | A | 2746 | U | 2747 | cWW | tSH | tHH | cWW | cWW |
| 6 | J3_9H3G_020 | 9H3G | 0.0000 | 0 | A | LSU rRNA | A | 1654 | G | 1655 | A | 1656 | C | 1657 | G | 1658 | * | C | 1793 | C | 1794 | * | G | 1798 | A | 1799 | A | 1800 | A | 1801 | A | 1802 | U | 1803 | cWW | tSH | tHH | cWW | cWW |
| 7 | J3_9E6Q_013 | 9E6Q | 0.0851 | 0 | 1 | LSU rRNA | C | 1574 | G | 1575 | A | 1576 | C | 1577 | G | 1578 | * | C | 1706 | C | 1707 | * | G | 1711 | A | 1712 | A | 1713 | A | 1714 | A | 1715 | G | 1716 | cWW | tSH | tHH | cWW | cWW |
| 8 | J3_4V9F_017 | 4V9F | 0.0918 | 0 | 0 | LSU rRNA | U | 1531 | G | 1532 | A | 1533 | C | 1534 | G | 1535 | * | C | 1650 | C | 1651 | * | G | 1655 | A | 1656 | A | 1657 | A | 1658 | A | 1659 | G | 1660 | cWW | tSH | tHH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGACG*CC*GAAAAU | 3 |
| AGACG*UC*GAAAAU | 2 |
| AGAAG*CC*GAAAAU | 1 |
| CGACG*CC*GAAAAG | 1 |
| UGACG*CC*GAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAC**AAAA | 7 |
| GAA**AAAA | 1 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Heat map statistics
- Min 0.07 | Avg 0.09 | Max 0.15
Coloring options: