J3_3CME_018

3D structure

PDB id

3CME (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

3CME|1|0|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CME_018 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.0512

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

3CME|1|0|A|302
3CME|1|0|C|303
3CME|1|0|G|304
3CME|1|0|A|305
3CME|1|0|A|306
3CME|1|0|G|307
*
3CME|1|0|C|323
3CME|1|0|G|324
3CME|1|0|U|325
3CME|1|0|G|326
3CME|1|0|A|327
3CME|1|0|U|328
3CME|1|0|A|329
3CME|1|0|C|330
3CME|1|0|A|331
3CME|1|0|G|332
*
3CME|1|0|C|344
3CME|1|0|G|345
3CME|1|0|U|346
3CME|1|0|A|347
3CME|1|0|C|348
3CME|1|0|U|349

Current chains

Chain 0

50S RIBOSOMAL RNA

Nearby chains

Chain C

50S ribosomal protein L4P

Chain T

50S ribosomal protein L24P