J3_3CPW_010
3D structure
- PDB id
- 3CPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the antibiotic LINEZOLID bound to the large ribosomal subunit of HALOARCULA MARISMORTUI
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CCACAG*CGUUC*GUUCG
- Length
- 16 nucleotides
- Bulged bases
- 3CPW|1|9|C|3012, 3CPW|1|9|C|3113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3CPW_010 not in the Motif Atlas
- Homologous match to J3_4V9F_010
- Geometric discrepancy: 0.044
- The information below is about J3_4V9F_010
- Detailed Annotation
- 5S rRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89737.1
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
3CPW|1|9|C|3009
3CPW|1|9|C|3010
3CPW|1|9|A|3011
3CPW|1|9|C|3012
3CPW|1|9|A|3013
3CPW|1|9|G|3014
*
3CPW|1|9|C|3067
3CPW|1|9|G|3068
3CPW|1|9|U|3069
3CPW|1|9|U|3070
3CPW|1|9|C|3071
*
3CPW|1|9|G|3110
3CPW|1|9|U|3111
3CPW|1|9|U|3112
3CPW|1|9|C|3113
3CPW|1|9|G|3114
Current chains
- Chain 9
- 5S RIBOSOMAL RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L18P
- Chain P
- 50S ribosomal protein L21e
Coloring options: