J3_3CXC_006

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

3CXC|1|0|G|1683, 3CXC|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CXC_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0364

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3CXC|1|0|U|1412
3CXC|1|0|A|1413
3CXC|1|0|A|1414
3CXC|1|0|G|1415
*
3CXC|1|0|C|1680
3CXC|1|0|G|1681
3CXC|1|0|A|1682
3CXC|1|0|G|1683
3CXC|1|0|A|1684
3CXC|1|0|A|1685
3CXC|1|0|C|1686
*
3CXC|1|0|G|1695
3CXC|1|0|U|1696
3CXC|1|0|G|1697

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain O

RIBOSOMAL PROTEIN L19E

Chain Z

RIBOSOMAL PROTEIN L37E