J3_3CXC_013

3D structure

PDB id

3CXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of an enhanced oxazolidinone inhibitor bound to the 50S ribosomal subunit of H. marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3CXC_013 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0556

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

3CXC|1|0|C|1450
3CXC|1|0|C|1451
3CXC|1|0|G|1452
3CXC|1|0|G|1453
3CXC|1|0|U|1454
3CXC|1|0|C|1455
*
3CXC|1|0|G|1490
3CXC|1|0|G|1491
3CXC|1|0|A|1492
3CXC|1|0|A|1493
3CXC|1|0|A|1494
*
3CXC|1|0|U|1511
3CXC|1|0|G|1512

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

RIBOSOMAL PROTEIN L39E

Chain R

RIBOSOMAL PROTEIN L23