J3_3DHS_001

3D structure

PDB id

3DHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mapping metal-binding sites in the catalytic domain of bacterial RNase P RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGG*CG*UACAGAACAUGGCUUAUAG

Length

24 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3DHS_001 not in the Motif Atlas

Geometric match to J3_2A64_003

Geometric discrepancy: 0.191

The information below is about J3_2A64_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10708.1

Basepair signature

cWW-cSS-cWW-cSS-F-F-F-cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

3DHS|1|A|C|13
3DHS|1|A|G|14
3DHS|1|A|G|15
*
3DHS|1|A|C|344
3DHS|1|A|G|345
*
3DHS|1|A|U|384
3DHS|1|A|A|385
3DHS|1|A|C|386
3DHS|1|A|A|387
3DHS|1|A|G|388
3DHS|1|A|A|389
3DHS|1|A|A|390
3DHS|1|A|C|391
3DHS|1|A|A|392
3DHS|1|A|U|393
3DHS|1|A|G|394
3DHS|1|A|G|395
3DHS|1|A|C|396
3DHS|1|A|U|397
3DHS|1|A|U|398
3DHS|1|A|A|399
3DHS|1|A|U|400
3DHS|1|A|A|401
3DHS|1|A|G|402

Current chains

Chain A

RNase P RNA

Nearby chains