3DHS Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3DHS_001 | 1/A/31:36 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_3DHS_002 | 1/A/69:76 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_142 HL_01609.3 | |
| HL_3DHS_004 | 1/A/288:297 | No text annotation | geometric HL_2A64_005 HL_53504.3 | |
| HL_3DHS_005 | 1/A/313:324 | No text annotation | geometric HL_2A64_006 HL_38649.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3DHS_003 | No text annotation | ||
| HL_3DHS_006 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3DHS_002 | 1/A/51:53, 1/A/395:396 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_3DHS_003 | 1/A/66:68, 1/A/77:78 | Single bulged U | geometric IL_2A64_003 IL_89505.4 | |
| IL_3DHS_004 | 1/A/284:288, 1/A/297:301 | Triple sheared |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3DHS_001 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3DHS_001 | 1/A/13:15, 1/A/344:345, 1/A/384:402 | No text annotation | geometric J3_2A64_003 J3_10708.1 | |
| J6_3DHS_001 | 1/A/21:23, 1/A/44:58, 1/A/254:258, 1/A/274:278, 1/A/307:308, 1/A/329:338 | No text annotation |
Problematic loops
No problematic loops
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