J3_3E5F_001

3D structure

PDB id

3E5F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structures of the SMK box (SAM-III) Riboswitch with Se-SAM

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAA*UGUAAC*GG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3E5F_001 not in the Motif Atlas

Geometric match to J3_3E5C_001

Geometric discrepancy: 0.0189

The information below is about J3_3E5C_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_80708.1

Basepair signature

cWW-F-F-F-F-tWS-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

3E5F|1|A|C|6
3E5F|1|A|G|7
3E5F|1|A|A|8
3E5F|1|A|A|9
*
3E5F|1|A|U|35
3E5F|1|A|G|36
3E5F|1|A|U|37
3E5F|1|A|A|38
3E5F|1|A|A|39
3E5F|1|A|C|40
*
3E5F|1|A|G|47
3E5F|1|A|G|48

Current chains

Chain A

SMK box (SAM-III) Riboswitch for RNA

Nearby chains