J3_3G4S_013

3D structure

PDB id

3G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Tiamulin bound to the large ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3G4S_013 not in the Motif Atlas

Geometric match to J3_4V9F_016

Geometric discrepancy: 0.1067

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

3G4S|1|0|C|1450
3G4S|1|0|C|1451
3G4S|1|0|G|1452
3G4S|1|0|G|1453
3G4S|1|0|U|1454
3G4S|1|0|C|1455
*
3G4S|1|0|G|1490
3G4S|1|0|G|1491
3G4S|1|0|A|1492
3G4S|1|0|A|1493
3G4S|1|0|A|1494
*
3G4S|1|0|U|1511
3G4S|1|0|G|1512

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P