J3_3GOG_001

3D structure

PDB id

3GOG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GUAAU*AGUUUCUACC*GACC

Length

19 nucleotides

Bulged bases

3GOG|1|A|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3GOG_001 not in the Motif Atlas

Geometric match to J3_1Y27_001

Geometric discrepancy: 0.0906

The information below is about J3_1Y27_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44163.2

Basepair signature

cWW-cWS-cWW-F-tWS-F-F-cWW-cWW-cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

3GOG|1|A|G|21
3GOG|1|A|U|22
3GOG|1|A|A|23
3GOG|1|A|A|24
3GOG|1|A|U|25
*
3GOG|1|A|A|45
3GOG|1|A|G|46
3GOG|1|A|U|47
3GOG|1|A|U|48
3GOG|1|A|U|49
3GOG|1|A|C|50
3GOG|1|A|U|51
3GOG|1|A|A|52
3GOG|1|A|C|53
3GOG|1|A|C|54
*
3GOG|1|A|G|72
3GOG|1|A|A|73
3GOG|1|A|C|74
3GOG|1|A|C|75

Current chains

Chain A

Guanine riboswitch

Nearby chains