J3_3I55_019

3D structure

PDB id

3I55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.11 Å

Loop

Sequence

GCC*GUCUAGCGAACC*GAUGAC

Length

21 nucleotides

Bulged bases

3I55|1|0|A|2425, 3I55|1|0|A|2463

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3I55_019 not in the Motif Atlas

Geometric match to J3_9E6Q_015

Geometric discrepancy: 0.1676

The information below is about J3_9E6Q_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04772.1

Basepair signature

cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

3I55|1|0|G|2316
3I55|1|0|C|2317
3I55|1|0|C|2318
*
3I55|1|0|G|2421
3I55|1|0|U|2422
3I55|1|0|C|2423
3I55|1|0|U|2424
3I55|1|0|A|2425
3I55|1|0|G|2426
3I55|1|0|C|2427
3I55|1|0|G|2428
3I55|1|0|A|2429
3I55|1|0|A|2430
3I55|1|0|C|2431
3I55|1|0|C|2432
*
3I55|1|0|G|2459
3I55|1|0|A|2460
3I55|1|0|U|2461
3I55|1|0|G|2462
3I55|1|0|A|2463
3I55|1|0|C|2464

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain L

50S ribosomal protein L15P

Chain Q

50S ribosomal protein L21e