J3_9E6Q_015
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GCC*GCCUAGAGAACG*(OMC)AUGAC
- Length
- 21 nucleotides
- Bulged bases
- 9E6Q|1|1|A|2542
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9E6Q_015 not in the Motif Atlas
- Geometric match to J3_5TBW_067
- Geometric discrepancy: 0.118
- The information below is about J3_5TBW_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9E6Q|1|1|G|2394
9E6Q|1|1|C|2395
9E6Q|1|1|C|2396
*
9E6Q|1|1|G|2499
9E6Q|1|1|C|2500
9E6Q|1|1|C|2501
9E6Q|1|1|U|2502
9E6Q|1|1|A|2503
9E6Q|1|1|G|2504
9E6Q|1|1|A|2505
9E6Q|1|1|G|2506
9E6Q|1|1|A|2507
9E6Q|1|1|A|2508
9E6Q|1|1|C|2509
9E6Q|1|1|G|2510
*
9E6Q|1|1|OMC|2538
9E6Q|1|1|A|2539
9E6Q|1|1|U|2540
9E6Q|1|1|G|2541
9E6Q|1|1|A|2542
9E6Q|1|1|C|2543
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Putative signal-transduction protein with CBS domains
- Chain AL
- Large ribosomal subunit protein uL15
- Chain AS
- Large ribosomal subunit protein eL21
- Chain Ah
- eL42
Coloring options: