J3_3IVN_001
3D structure
- PDB id
- 3IVN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the U65C mutant A-riboswitch aptamer from the Bacillus subtilis pbuE operon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- AUAAC*GGUGUCUACC*GACU
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44163.2
- Basepair signature
- cWW-cWS-cWW-F-tWS-F-F-cWW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
3IVN|1|A|A|12
3IVN|1|A|U|13
3IVN|1|A|A|14
3IVN|1|A|A|15
3IVN|1|A|C|16
*
3IVN|1|A|G|36
3IVN|1|A|G|37
3IVN|1|A|U|38
3IVN|1|A|G|39
3IVN|1|A|U|40
3IVN|1|A|C|41
3IVN|1|A|U|42
3IVN|1|A|A|43
3IVN|1|A|C|44
3IVN|1|A|C|45
*
3IVN|1|A|G|63
3IVN|1|A|A|64
3IVN|1|A|C|65
3IVN|1|A|U|66
Current chains
- Chain A
- A-riboswitch
Nearby chains
- Chain B
- Purine riboswitch
Coloring options: