J3_3IWN_001

3D structure

PDB id

3IWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of a bacterial c-di-GMP riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCACAGGG*CAAAGC*GUUACC

Length

20 nucleotides

Bulged bases

3IWN|1|A|C|5, 3IWN|1|A|C|7, 3IWN|1|A|A|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_72804.1

Basepair signature

cWW-F-F-F-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

3IWN|1|A|G|4
3IWN|1|A|C|5
3IWN|1|A|A|6
3IWN|1|A|C|7
3IWN|1|A|A|8
3IWN|1|A|G|9
3IWN|1|A|G|10
3IWN|1|A|G|11
*
3IWN|1|A|C|36
3IWN|1|A|A|37
3IWN|1|A|A|38
3IWN|1|A|A|39
3IWN|1|A|G|40
3IWN|1|A|C|41
*
3IWN|1|A|G|83
3IWN|1|A|U|84
3IWN|1|A|U|85
3IWN|1|A|A|86
3IWN|1|A|C|87
3IWN|1|A|C|88

Current chains

Chain A

C-di-GMP riboswitch

Nearby chains