J3_3J28_001

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAUUG*CAGC

Length

22 nucleotides

Bulged bases

3J28|1|N|A|51, 3J28|1|N|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J28|1|N|G|46
3J28|1|N|C|47
3J28|1|N|C|48
3J28|1|N|U|49
3J28|1|N|A|50
3J28|1|N|A|51
3J28|1|N|C|52
*
3J28|1|N|G|359
3J28|1|N|G|360
3J28|1|N|G|361
3J28|1|N|G|362
3J28|1|N|A|363
3J28|1|N|A|364
3J28|1|N|U|365
3J28|1|N|A|366
3J28|1|N|U|367
3J28|1|N|U|368
3J28|1|N|G|369
*
3J28|1|N|C|392
3J28|1|N|A|393
3J28|1|N|G|394
3J28|1|N|C|395

Current chains

Chain N

16S rRNA

Nearby chains