J3_3J28_011

3D structure

PDB id

3J28 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

12.9 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J28_011 not in the Motif Atlas

Homologous match to J3_5J7L_002

Geometric discrepancy: 0.3621

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

3J28|1|N|C|586
3J28|1|N|G|587
3J28|1|N|G|588
*
3J28|1|N|C|651
3J28|1|N|U|652
3J28|1|N|U|653
3J28|1|N|G|654
*
3J28|1|N|C|754
3J28|1|N|G|755

Current chains

Chain N

16S rRNA

Nearby chains