J3_3J29_024

3D structure

PDB id

3J29 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

3J29|1|N|U|1212, 3J29|1|N|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J29_024 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.4078

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

3J29|1|N|C|990
3J29|1|N|U|991
3J29|1|N|U|992
3J29|1|N|G|993
3J29|1|N|A|994
3J29|1|N|C|995
3J29|1|N|A|996
3J29|1|N|U|997
*
3J29|1|N|A|1044
3J29|1|N|C|1045
3J29|1|N|A|1046
3J29|1|N|G|1047
*
3J29|1|N|C|1210
3J29|1|N|U|1211
3J29|1|N|U|1212
3J29|1|N|A|1213
3J29|1|N|C|1214
3J29|1|N|G|1215

Current chains

Chain N

16S rRNA

Nearby chains