J3_3J2E_008

3D structure

PDB id

3J2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

15.3 Å

Loop

Sequence

UAU*AGAC*GGUG

Length

11 nucleotides

Bulged bases

3J2E|1|N|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2E_008 not in the Motif Atlas

Homologous match to J3_5J7L_010

Geometric discrepancy: 0.4024

The information below is about J3_5J7L_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82365.4

Basepair signature

cWW-F-cWW-cWW-F-F

Number of instances in this motif group

4

Unit IDs

3J2E|1|N|U|1116
3J2E|1|N|A|1117
3J2E|1|N|U|1118
*
3J2E|1|N|A|1155
3J2E|1|N|G|1156
3J2E|1|N|A|1157
3J2E|1|N|C|1158
*
3J2E|1|N|G|1181
3J2E|1|N|G|1182
3J2E|1|N|U|1183
3J2E|1|N|G|1184

Current chains

Chain N

16S rRNA

Nearby chains