J3_3J2F_006

3D structure

PDB id

3J2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

17.6 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

3J2F|1|N|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2F_006 not in the Motif Atlas

Homologous match to J3_5J7L_007

Geometric discrepancy: 0.3364

The information below is about J3_5J7L_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

3J2F|1|N|C|990
3J2F|1|N|U|991
3J2F|1|N|U|992
3J2F|1|N|G|993
*
3J2F|1|N|C|1045
3J2F|1|N|A|1046
3J2F|1|N|G|1047
*
3J2F|1|N|C|1210
3J2F|1|N|U|1211
3J2F|1|N|U|1212
3J2F|1|N|A|1213
3J2F|1|N|C|1214
3J2F|1|N|G|1215

Current chains

Chain N

16S rRNA

Nearby chains