J3_3J2G_011

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

3J2G|1|N|A|51

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J2G_011 not in the Motif Atlas

Homologous match to J3_6CZR_058

Geometric discrepancy: 0.3601

The information below is about J3_6CZR_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.3

Basepair signature

cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

3J2G|1|N|G|46
3J2G|1|N|C|47
3J2G|1|N|C|48
3J2G|1|N|U|49
3J2G|1|N|A|50
3J2G|1|N|A|51
3J2G|1|N|C|52
*
3J2G|1|N|G|359
3J2G|1|N|G|360
3J2G|1|N|G|361
3J2G|1|N|G|362
3J2G|1|N|A|363
3J2G|1|N|A|364
3J2G|1|N|U|365
3J2G|1|N|A|366
3J2G|1|N|U|367
*
3J2G|1|N|A|393
3J2G|1|N|G|394
3J2G|1|N|C|395

Current chains

Chain N

16S rRNA

Nearby chains