J3_3J5L_005

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

3J5L|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J5L_005 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.1127

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

3J5L|1|A|C|1306
3J5L|1|A|A|1307
3J5L|1|A|A|1308
3J5L|1|A|G|1309
*
3J5L|1|A|C|1605
3J5L|1|A|C|1606
3J5L|1|A|C|1607
3J5L|1|A|A|1608
3J5L|1|A|A|1609
3J5L|1|A|A|1610
3J5L|1|A|C|1611
*
3J5L|1|A|G|1620
3J5L|1|A|U|1621
3J5L|1|A|G|1622

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34