3D structure

PDB id
3J5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the E. coli 50S subunit with ErmBL nascent chain
Experimental method
ELECTRON MICROSCOPY
Resolution
6.6 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
3J5L|1|A|A|504, 3J5L|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_3J5L_015 not in the Motif Atlas
Homologous match to J3_5J7L_066
Geometric discrepancy: 0.0499
The information below is about J3_5J7L_066
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

3J5L|1|A|G|30
3J5L|1|A|C|31
*
3J5L|1|A|G|474
3J5L|1|A|C|475
3J5L|1|A|G|476
3J5L|1|A|A|477
3J5L|1|A|A|478
3J5L|1|A|A|479
3J5L|1|A|A|480
3J5L|1|A|G|481
3J5L|1|A|A|482
3J5L|1|A|A|483
3J5L|1|A|C|484
*
3J5L|1|A|G|496
3J5L|1|A|A|497
3J5L|1|A|G|498
3J5L|1|A|U|499
3J5L|1|A|G|500
3J5L|1|A|A|501
3J5L|1|A|A|502
3J5L|1|A|A|503
3J5L|1|A|A|504
3J5L|1|A|A|505
3J5L|1|A|G|506
3J5L|1|A|A|507
3J5L|1|A|A|508
3J5L|1|A|C|509
3J5L|1|A|C|510

Current chains

Chain A
23S ribsomal RNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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