J3_3J6B_001
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUCUA*UAG*CUGG
- Length
- 14 nucleotides
- Bulged bases
- 3J6B|1|A|U|595, 3J6B|1|A|U|683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6B_001 not in the Motif Atlas
- Homologous match to J3_7RQB_004
- Geometric discrepancy: 0.1918
- The information below is about J3_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6B|1|A|C|592
3J6B|1|A|G|593
3J6B|1|A|A|594
3J6B|1|A|U|595
3J6B|1|A|C|596
3J6B|1|A|U|597
3J6B|1|A|A|598
*
3J6B|1|A|U|664
3J6B|1|A|A|665
3J6B|1|A|G|666
*
3J6B|1|A|C|682
3J6B|1|A|U|683
3J6B|1|A|G|684
3J6B|1|A|G|685
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain 3
- 54S ribosomal protein L27, mitochondrial
- Chain B
- 54S ribosomal protein RML2, mitochondrial
- Chain D
- 54S ribosomal protein YmL6, mitochondrial
- Chain Y
- 54S ribosomal protein L34, mitochondrial
Coloring options: