J3_3J6X_008
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 3J6X|1|1S|G|1199, 3J6X|1|1S|G|1201, 3J6X|1|1S|A|1203
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_008 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1502
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3J6X|1|1S|C|1180
3J6X|1|1S|U|1181
3J6X|1|1S|U|1182
3J6X|1|1S|A|1183
3J6X|1|1S|A|1184
3J6X|1|1S|U|1185
3J6X|1|1S|U|1186
3J6X|1|1S|U|1187
*
3J6X|1|1S|G|1198
3J6X|1|1S|G|1199
3J6X|1|1S|G|1200
3J6X|1|1S|G|1201
3J6X|1|1S|A|1202
3J6X|1|1S|A|1203
3J6X|1|1S|A|1204
3J6X|1|1S|C|1205
3J6X|1|1S|U|1206
3J6X|1|1S|C|1207
3J6X|1|1S|A|1208
3J6X|1|1S|C|1209
*
3J6X|1|1S|G|1454
3J6X|1|1S|G|1455
3J6X|1|1S|C|1456
3J6X|1|1S|C|1457
3J6X|1|1S|G|1458
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 15
- 40S ribosomal protein S15
- Chain 18
- 40S ribosomal protein S18
- Chain 20
- 40S ribosomal protein S20
- Chain 29
- 40S ribosomal protein S29
- Chain IR
- TSV IRES mRNA
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