J3_3J6X_011

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UGG*UUGUC*GAUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|1S|U|1293
3J6X|1|1S|G|1294
3J6X|1|1S|G|1295
*
3J6X|1|1S|U|1302
3J6X|1|1S|U|1303
3J6X|1|1S|G|1304
3J6X|1|1S|U|1305
3J6X|1|1S|C|1306
*
3J6X|1|1S|G|1318
3J6X|1|1S|A|1319
3J6X|1|1S|U|1320
3J6X|1|1S|A|1321
3J6X|1|1S|A|1322

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17

Chain 21

40S ribosomal protein S21

Chain S0

40S ribosomal protein S0

Chain S2

40S ribosomal protein S2