J3_3J6X_024
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CA*UAACUGAAU*AGGAAG
- Length
- 17 nucleotides
- Bulged bases
- 3J6X|1|2S|A|1642
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6X|1|2S|C|1631
3J6X|1|2S|A|1632
*
3J6X|1|2S|U|1641
3J6X|1|2S|A|1642
3J6X|1|2S|A|1643
3J6X|1|2S|C|1644
3J6X|1|2S|U|1645
3J6X|1|2S|G|1646
3J6X|1|2S|A|1647
3J6X|1|2S|A|1648
3J6X|1|2S|U|1649
*
3J6X|1|2S|A|1806
3J6X|1|2S|G|1807
3J6X|1|2S|G|1808
3J6X|1|2S|A|1809
3J6X|1|2S|A|1810
3J6X|1|2S|G|1811
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L27
- Chain 74
- 60S ribosomal protein L34
- Chain 78
- 60S ribosomal protein L38
- Chain L2
- 60S ribosomal protein L2
Coloring options: