J3_3J6X_029

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CAUUUG*CUUAGAUG*CUG

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6X|1|2S|C|3298
3J6X|1|2S|A|3299
3J6X|1|2S|U|3300
3J6X|1|2S|U|3301
3J6X|1|2S|U|3302
3J6X|1|2S|G|3303
*
3J6X|1|2S|C|3311
3J6X|1|2S|U|3312
3J6X|1|2S|U|3313
3J6X|1|2S|A|3314
3J6X|1|2S|G|3315
3J6X|1|2S|A|3316
3J6X|1|2S|U|3317
3J6X|1|2S|G|3318
*
3J6X|1|2S|C|3388
3J6X|1|2S|U|3389
3J6X|1|2S|G|3390

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 57

60S ribosomal protein L17

Chain 71

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3