J3_3J6X_031
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGAUAAAAAAUCAAUG*CUCUUUG*CAU
- Length
- 26 nucleotides
- Bulged bases
- 3J6X|1|1S|U|238
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6X|1|1S|A|213
3J6X|1|1S|G|214
3J6X|1|1S|A|215
3J6X|1|1S|U|216
3J6X|1|1S|A|217
3J6X|1|1S|A|218
3J6X|1|1S|A|219
3J6X|1|1S|A|220
3J6X|1|1S|A|221
3J6X|1|1S|A|222
3J6X|1|1S|U|223
3J6X|1|1S|C|224
3J6X|1|1S|A|225
3J6X|1|1S|A|226
3J6X|1|1S|U|227
3J6X|1|1S|G|228
*
3J6X|1|1S|C|237
3J6X|1|1S|U|238
3J6X|1|1S|C|239
3J6X|1|1S|U|240
3J6X|1|1S|U|241
3J6X|1|1S|U|242
3J6X|1|1S|G|243
*
3J6X|1|1S|C|250
3J6X|1|1S|A|251
3J6X|1|1S|U|252
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain S4
- 40S ribosomal protein S4
- Chain S6
- 40S ribosomal protein S6
Coloring options: