J3_3J6X_032
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 3J6X|1|1S|U|864
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_032 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.2227
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J6X|1|1S|U|633
3J6X|1|1S|G|634
3J6X|1|1S|A|635
*
3J6X|1|1S|U|861
3J6X|1|1S|A|862
3J6X|1|1S|A|863
3J6X|1|1S|U|864
3J6X|1|1S|A|865
3J6X|1|1S|G|866
*
3J6X|1|1S|C|962
3J6X|1|1S|A|963
3J6X|1|1S|U|964
3J6X|1|1S|U|965
3J6X|1|1S|A|966
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 13
- 40S ribosomal protein S13
- Chain 22
- 40S ribosomal protein S22
- Chain 23
- 40S ribosomal protein S23
- Chain 27
- 40S ribosomal protein S27
- Chain S7
- 40S ribosomal protein S7
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