J3_3J6X_037
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAGACAUGG*CUGG*CAUAAUG
- Length
- 20 nucleotides
- Bulged bases
- 3J6X|1|2S|C|439, 3J6X|1|2S|A|440, 3J6X|1|2S|U|441, 3J6X|1|2S|G|494
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6X|1|2S|C|435
3J6X|1|2S|A|436
3J6X|1|2S|G|437
3J6X|1|2S|A|438
3J6X|1|2S|C|439
3J6X|1|2S|A|440
3J6X|1|2S|U|441
3J6X|1|2S|G|442
3J6X|1|2S|G|443
*
3J6X|1|2S|C|492
3J6X|1|2S|U|493
3J6X|1|2S|G|494
3J6X|1|2S|G|495
*
3J6X|1|2S|C|618
3J6X|1|2S|A|619
3J6X|1|2S|U|620
3J6X|1|2S|A|621
3J6X|1|2S|A|622
3J6X|1|2S|U|623
3J6X|1|2S|G|624
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 72
- 60S ribosomal protein L32
- Chain 73
- 60S ribosomal protein L33
- Chain L6
- 60S ribosomal protein L6
Coloring options: