J3_3J6X_041
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 3J6X|1|2S|A|3215, 3J6X|1|2S|C|3217, 3J6X|1|2S|A|3268, 3J6X|1|2S|U|3270, 3J6X|1|2S|C|3272, 3J6X|1|2S|G|3276
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6X_041 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.2061
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3J6X|1|2S|U|3171
3J6X|1|2S|A|3172
3J6X|1|2S|G|3173
3J6X|1|2S|A|3174
3J6X|1|2S|U|3175
3J6X|1|2S|G|3176
*
3J6X|1|2S|C|3212
3J6X|1|2S|A|3213
3J6X|1|2S|U|3214
3J6X|1|2S|A|3215
3J6X|1|2S|G|3216
3J6X|1|2S|C|3217
3J6X|1|2S|A|3218
3J6X|1|2S|G|3219
3J6X|1|2S|G|3220
*
3J6X|1|2S|C|3265
3J6X|1|2S|G|3266
3J6X|1|2S|A|3267
3J6X|1|2S|A|3268
3J6X|1|2S|U|3269
3J6X|1|2S|U|3270
3J6X|1|2S|G|3271
3J6X|1|2S|C|3272
3J6X|1|2S|A|3273
3J6X|1|2S|A|3274
3J6X|1|2S|U|3275
3J6X|1|2S|G|3276
3J6X|1|2S|U|3277
3J6X|1|2S|C|3278
3J6X|1|2S|A|3279
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 54
- 60S ribosomal protein L14
- Chain 56
- 60S ribosomal protein L16
- Chain 57
- 60S ribosomal protein L17
- Chain 73
- 60S ribosomal protein L33
- Chain L6
- 60S ribosomal protein L6
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