J3_3J6Y_004
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 3J6Y|1|1S|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1411
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J6Y|1|1S|A|881
3J6Y|1|1S|U|882
3J6Y|1|1S|C|883
3J6Y|1|1S|A|884
*
3J6Y|1|1S|U|928
3J6Y|1|1S|A|929
3J6Y|1|1S|A|930
3J6Y|1|1S|C|931
3J6Y|1|1S|U|932
3J6Y|1|1S|A|933
3J6Y|1|1S|C|934
3J6Y|1|1S|U|935
3J6Y|1|1S|G|936
*
3J6Y|1|1S|C|943
3J6Y|1|1S|A|944
3J6Y|1|1S|U|945
3J6Y|1|1S|U|946
3J6Y|1|1S|U|947
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 13
- 40S ribosomal protein S13
- Chain 14
- 40S ribosomal protein S14
- Chain 26
- 40S ribosomal protein S26
- Chain 83
- 60S ribosomal protein L43
- Chain S1
- 40S ribosomal protein S1
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