J3_3J6Y_019
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|1065, 3J6Y|1|2S|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_019 not in the Motif Atlas
- Homologous match to J3_5TBW_006
- Geometric discrepancy: 0.2082
- The information below is about J3_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|U|986
3J6Y|1|2S|U|987
*
3J6Y|1|2S|A|1062
3J6Y|1|2S|G|1063
3J6Y|1|2S|A|1064
3J6Y|1|2S|A|1065
3J6Y|1|2S|G|1066
*
3J6Y|1|2S|C|1092
3J6Y|1|2S|A|1093
3J6Y|1|2S|U|1094
3J6Y|1|2S|U|1095
3J6Y|1|2S|U|1096
3J6Y|1|2S|G|1097
3J6Y|1|2S|A|1098
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 61
- 60S ribosomal protein L21
- Chain 69
- 60S ribosomal protein L29
- Chain L7
- 60S ribosomal protein L7
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