J3_3J6Y_026

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AGCU*ACGUUCUAGCAUUCAAGG*CUGAU

Length

27 nucleotides

Bulged bases

3J6Y|1|2S|G|2549, 3J6Y|1|2S|U|2550, 3J6Y|1|2S|U|2551, 3J6Y|1|2S|C|2552, 3J6Y|1|2S|U|2553, 3J6Y|1|2S|A|2554, 3J6Y|1|2S|U|2558, 3J6Y|1|2S|U|2559, 3J6Y|1|2S|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|A|2529
3J6Y|1|2S|G|2530
3J6Y|1|2S|C|2531
3J6Y|1|2S|U|2532
*
3J6Y|1|2S|A|2547
3J6Y|1|2S|C|2548
3J6Y|1|2S|G|2549
3J6Y|1|2S|U|2550
3J6Y|1|2S|U|2551
3J6Y|1|2S|C|2552
3J6Y|1|2S|U|2553
3J6Y|1|2S|A|2554
3J6Y|1|2S|G|2555
3J6Y|1|2S|C|2556
3J6Y|1|2S|A|2557
3J6Y|1|2S|U|2558
3J6Y|1|2S|U|2559
3J6Y|1|2S|C|2560
3J6Y|1|2S|A|2561
3J6Y|1|2S|A|2562
3J6Y|1|2S|G|2563
3J6Y|1|2S|G|2564
*
3J6Y|1|2S|C|2577
3J6Y|1|2S|U|2578
3J6Y|1|2S|G|2579
3J6Y|1|2S|A|2580
3J6Y|1|2S|U|2581

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 65

60S ribosomal protein L25

Chain 67

60S ribosomal protein L27

Chain 70

60S ribosomal protein L30

Chain 74

60S ribosomal protein L34

Chain 83

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2

Chain L8

60S ribosomal protein L8