J3_3J6Y_029
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAU*AGAUG*CUG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_029 not in the Motif Atlas
- Homologous match to J3_5TBW_015
- Geometric discrepancy: 0.2683
- The information below is about J3_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_48314.1
- Basepair signature
- cWW-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
3J6Y|1|2S|C|3298
3J6Y|1|2S|A|3299
3J6Y|1|2S|U|3300
*
3J6Y|1|2S|A|3314
3J6Y|1|2S|G|3315
3J6Y|1|2S|A|3316
3J6Y|1|2S|U|3317
3J6Y|1|2S|G|3318
*
3J6Y|1|2S|C|3388
3J6Y|1|2S|U|3389
3J6Y|1|2S|G|3390
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 71
- 60S ribosomal protein L31
- Chain L3
- 60S ribosomal protein L3
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