J3_3J6Y_030

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCAUAU*AGC*GUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|5S|C|9
3J6Y|1|5S|C|10
3J6Y|1|5S|A|11
3J6Y|1|5S|U|12
3J6Y|1|5S|A|13
3J6Y|1|5S|U|14
*
3J6Y|1|5S|A|66
3J6Y|1|5S|G|67
3J6Y|1|5S|C|68
*
3J6Y|1|5S|G|110
3J6Y|1|5S|U|111
3J6Y|1|5S|G|112

Current chains

Chain 5S

5S ribosomal RNA

Nearby chains

Chain 2S

Large subunit ribosomal RNA; LSU rRNA

Chain 50

60S ribosomal protein L10

Chain 61

60S ribosomal protein L21

Chain L5

60S ribosomal protein L5