J3_3J6Y_035
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|117, 3J6Y|1|2S|G|120, 3J6Y|1|2S|A|121, 3J6Y|1|2S|U|147, 3J6Y|1|2S|G|156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|C|113
3J6Y|1|2S|A|114
3J6Y|1|2S|A|115
3J6Y|1|2S|A|116
3J6Y|1|2S|U|117
3J6Y|1|2S|U|118
3J6Y|1|2S|U|119
3J6Y|1|2S|G|120
3J6Y|1|2S|A|121
3J6Y|1|2S|A|122
3J6Y|1|2S|A|123
3J6Y|1|2S|U|124
*
3J6Y|1|2S|A|144
3J6Y|1|2S|G|145
3J6Y|1|2S|U|146
3J6Y|1|2S|U|147
3J6Y|1|2S|G|148
3J6Y|1|2S|U|149
3J6Y|1|2S|A|150
3J6Y|1|2S|A|151
3J6Y|1|2S|U|152
3J6Y|1|2S|U|153
3J6Y|1|2S|U|154
3J6Y|1|2S|G|155
3J6Y|1|2S|G|156
3J6Y|1|2S|A|157
3J6Y|1|2S|G|158
*
3J6Y|1|2S|C|263
3J6Y|1|2S|G|264
3J6Y|1|2S|A|265
3J6Y|1|2S|A|266
3J6Y|1|2S|G|267
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 75
- 60S ribosomal protein L35
- Chain 76
- 60S ribosomal protein L36
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L8
- 60S ribosomal protein L8
Coloring options: