J3_3J6Y_037
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 3J6Y|1|2S|U|343, 3J6Y|1|2S|A|351, 3J6Y|1|8S|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_037 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.154
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J6Y|1|2S|C|340
3J6Y|1|2S|G|341
3J6Y|1|2S|A|342
3J6Y|1|2S|U|343
3J6Y|1|2S|A|344
3J6Y|1|2S|G|345
3J6Y|1|2S|C|346
3J6Y|1|2S|G|347
3J6Y|1|2S|A|348
3J6Y|1|2S|A|349
3J6Y|1|2S|C|350
3J6Y|1|2S|A|351
3J6Y|1|2S|A|352
3J6Y|1|2S|G|353
3J6Y|1|2S|U|354
3J6Y|1|2S|A|355
3J6Y|1|2S|C|356
*
3J6Y|1|2S|G|363
3J6Y|1|2S|G|364
3J6Y|1|2S|A|365
3J6Y|1|2S|A|366
3J6Y|1|2S|A|367
3J6Y|1|2S|G|368
*
3J6Y|1|8S|C|21
3J6Y|1|8S|U|22
3J6Y|1|8S|U|23
3J6Y|1|8S|G|24
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 66
- 60S ribosomal protein L26
- Chain 77
- 60S ribosomal protein L37
- Chain 79
- 60S ribosomal protein L39
- Chain L4
- 60S ribosomal protein L4
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