J3_3J6Y_039

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AUGAAAAGAAC*GAGUGAAAAAGUACGUGAAAU*ACGGAUCU

Length

40 nucleotides

Bulged bases

3J6Y|1|2S|A|398, 3J6Y|1|2S|A|402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J6Y|1|2S|A|369
3J6Y|1|2S|U|370
3J6Y|1|2S|G|371
3J6Y|1|2S|A|372
3J6Y|1|2S|A|373
3J6Y|1|2S|A|374
3J6Y|1|2S|A|375
3J6Y|1|2S|G|376
3J6Y|1|2S|A|377
3J6Y|1|2S|A|378
3J6Y|1|2S|C|379
*
3J6Y|1|2S|G|390
3J6Y|1|2S|A|391
3J6Y|1|2S|G|392
3J6Y|1|2S|U|393
3J6Y|1|2S|G|394
3J6Y|1|2S|A|395
3J6Y|1|2S|A|396
3J6Y|1|2S|A|397
3J6Y|1|2S|A|398
3J6Y|1|2S|A|399
3J6Y|1|2S|G|400
3J6Y|1|2S|U|401
3J6Y|1|2S|A|402
3J6Y|1|2S|C|403
3J6Y|1|2S|G|404
3J6Y|1|2S|U|405
3J6Y|1|2S|G|406
3J6Y|1|2S|A|407
3J6Y|1|2S|A|408
3J6Y|1|2S|A|409
3J6Y|1|2S|U|410
*
3J6Y|1|8S|A|13
3J6Y|1|8S|C|14
3J6Y|1|8S|G|15
3J6Y|1|8S|G|16
3J6Y|1|8S|A|17
3J6Y|1|8S|U|18
3J6Y|1|8S|C|19
3J6Y|1|8S|U|20

Current chains

Chain 2S

25S ribosomal RNA

Chain 8S

5.8S ribosomal RNA

Nearby chains

Chain 57

60S ribosomal protein L17

Chain 66

60S ribosomal protein L26

Chain 72

60S ribosomal protein L32

Chain 79

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4