J3_3J6Y_041
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGC*GCCACCAU
- Length
- 26 nucleotides
- Bulged bases
- 3J6Y|1|2S|C|1556, 3J6Y|1|2S|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
3J6Y|1|2S|A|1537
3J6Y|1|2S|G|1538
3J6Y|1|2S|A|1539
3J6Y|1|2S|U|1540
3J6Y|1|2S|G|1541
3J6Y|1|2S|G|1542
*
3J6Y|1|2S|C|1551
3J6Y|1|2S|G|1552
3J6Y|1|2S|U|1553
3J6Y|1|2S|U|1554
3J6Y|1|2S|U|1555
3J6Y|1|2S|C|1556
3J6Y|1|2S|A|1557
3J6Y|1|2S|A|1558
3J6Y|1|2S|A|1559
3J6Y|1|2S|G|1560
3J6Y|1|2S|G|1561
3J6Y|1|2S|C|1562
*
3J6Y|1|2S|G|1577
3J6Y|1|2S|C|1578
3J6Y|1|2S|C|1579
3J6Y|1|2S|A|1580
3J6Y|1|2S|C|1581
3J6Y|1|2S|C|1582
3J6Y|1|2S|A|1583
3J6Y|1|2S|U|1584
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 55
- 60S ribosomal protein L15
- Chain 65
- 60S ribosomal protein L25
- Chain 77
- 60S ribosomal protein L37
- Chain 8S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L2
- 60S ribosomal protein L2
- Chain L8
- 60S ribosomal protein L8
Coloring options: