J3_3J6Y_046
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 3J6Y|1|5S|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J6Y_046 not in the Motif Atlas
- Homologous match to J3_8C3A_059
- Geometric discrepancy: 0.2039
- The information below is about J3_8C3A_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J6Y|1|5S|C|9
3J6Y|1|5S|C|10
3J6Y|1|5S|A|11
3J6Y|1|5S|U|12
3J6Y|1|5S|A|13
3J6Y|1|5S|U|14
*
3J6Y|1|5S|A|66
3J6Y|1|5S|G|67
*
3J6Y|1|5S|U|111
3J6Y|1|5S|G|112
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 50
- 60S ribosomal protein L10
- Chain 61
- 60S ribosomal protein L21
- Chain L5
- 60S ribosomal protein L5
Coloring options: