J3_3J72_003
3D structure
- PDB id
- 3J72 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCAG*CGUAG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 3J72|1|5|A|1613
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J72_003 not in the Motif Atlas
- Geometric match to J3_8P9A_050
- Geometric discrepancy: 0.2424
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
3J72|1|5|G|1545
3J72|1|5|C|1546
3J72|1|5|A|1547
3J72|1|5|G|1548
*
3J72|1|5|C|1580
3J72|1|5|G|1581
3J72|1|5|U|1582
3J72|1|5|A|1583
3J72|1|5|G|1584
*
3J72|1|5|U|1609
3J72|1|5|C|1610
3J72|1|5|C|1611
3J72|1|5|G|1612
3J72|1|5|A|1613
3J72|1|5|C|1614
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uL12
- Chain R
- Ribosomal protein eL19
- Chain g
- Ribosomal protein eL34
- Chain p
- Ribosomal protein eL43
Coloring options: