J3_3J72_008
3D structure
- PDB id
- 3J72 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 3J72|1|5|U|4117, 3J72|1|5|U|4118, 3J72|1|5|C|4119, 3J72|1|5|U|4120, 3J72|1|5|G|4121, 3J72|1|5|A|4157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_3J72_008 not in the Motif Atlas
- Geometric match to J3_8CRE_020
- Geometric discrepancy: 0.2973
- The information below is about J3_8CRE_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
3J72|1|5|G|4091
3J72|1|5|G|4092
3J72|1|5|G|4093
3J72|1|5|G|4094
*
3J72|1|5|C|4114
3J72|1|5|G|4115
3J72|1|5|C|4116
3J72|1|5|U|4117
3J72|1|5|U|4118
3J72|1|5|C|4119
3J72|1|5|U|4120
3J72|1|5|G|4121
3J72|1|5|G|4122
3J72|1|5|C|4123
3J72|1|5|G|4124
3J72|1|5|C|4125
3J72|1|5|C|4126
3J72|1|5|A|4127
3J72|1|5|A|4128
3J72|1|5|G|4129
*
3J72|1|5|C|4155
3J72|1|5|G|4156
3J72|1|5|A|4157
3J72|1|5|C|4158
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uL12
- Chain G
- Ribosomal protein eL8
- Chain X
- Ribosomal protein uL23
- Chain Z
- Ribosomal protein eL27
- Chain c
- Ribosomal protein eL30
- Chain g
- Ribosomal protein eL34
- Chain p
- Ribosomal protein eL43
Coloring options: