J3_3J73_015

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_3J73_015 not in the Motif Atlas

Geometric match to J3_8CRE_083

Geometric discrepancy: 0.2007

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

3J73|1|S2|U|1350
3J73|1|S2|G|1351
*
3J73|1|S2|U|1360
3J73|1|S2|G|1361
3J73|1|S2|U|1362
3J73|1|S2|C|1363
*
3J73|1|S2|G|1375
3J73|1|S2|A|1376
3J73|1|S2|U|1377
3J73|1|S2|A|1378
3J73|1|S2|A|1379

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

Ribosomal protein uS2

Chain SC

Ribosomal protein uS5

Chain SR

Ribosomal protein eS17