J3_3J73_016

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCAAG*CCCAGCCCGUGGAC*GGUAGCGG

Length

28 nucleotides

Bulged bases

3J73|1|5|C|216, 3J73|1|5|C|217, 3J73|1|5|U|224, 3J73|1|5|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J73|1|5|C|194
3J73|1|5|C|195
3J73|1|5|C|196
3J73|1|5|A|197
3J73|1|5|A|198
3J73|1|5|G|199
*
3J73|1|5|C|215
3J73|1|5|C|216
3J73|1|5|C|217
3J73|1|5|A|218
3J73|1|5|G|219
3J73|1|5|C|220
3J73|1|5|C|221
3J73|1|5|C|222
3J73|1|5|G|223
3J73|1|5|U|224
3J73|1|5|G|225
3J73|1|5|G|226
3J73|1|5|A|227
3J73|1|5|C|228
*
3J73|1|5|G|240
3J73|1|5|G|241
3J73|1|5|U|242
3J73|1|5|A|243
3J73|1|5|G|244
3J73|1|5|C|245
3J73|1|5|G|246
3J73|1|5|G|247

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

Ribosomal protein uL4

Chain Y

Ribosomal protein uL24