J3_3J73_024

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGAUGG*CCAGU*AGGGUGUAAAUCUC

Length

27 nucleotides

Bulged bases

3J73|1|5|U|2554, 3J73|1|5|C|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J73|1|5|G|2549
3J73|1|5|G|2550
3J73|1|5|A|2551
3J73|1|5|G|2552
3J73|1|5|A|2553
3J73|1|5|U|2554
3J73|1|5|G|2555
3J73|1|5|G|2556
*
3J73|1|5|C|2571
3J73|1|5|C|2572
3J73|1|5|A|2573
3J73|1|5|G|2574
3J73|1|5|U|2575
*
3J73|1|5|A|2757
3J73|1|5|G|2758
3J73|1|5|G|2759
3J73|1|5|G|2760
3J73|1|5|U|2761
3J73|1|5|G|2762
3J73|1|5|U|2763
3J73|1|5|A|2764
3J73|1|5|A|2765
3J73|1|5|A|2766
3J73|1|5|U|2767
3J73|1|5|C|2768
3J73|1|5|U|2769
3J73|1|5|C|2770

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Z

Ribosomal protein eL27

Chain g

Ribosomal protein eL34